Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon.
Identifieur interne : 000135 ( Main/Exploration ); précédent : 000134; suivant : 000136Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon.
Auteurs : Sobhy S H. Abdelsalam [Japon, Égypte] ; Yusuke Kouzai [Japon] ; Megumi Watanabe [Japon] ; Komaki Inoue [Japon] ; Hidenori Matsui [Japon] ; Mikihiro Yamamoto [Japon] ; Yuki Ichinose [Japon] ; Kazuhiro Toyoda [Japon] ; Seiji Tsuge [Japon] ; Keiichi Mochida [Japon] ; Yoshiteru Noutoshi [Japon]Source :
- Scientific reports [ 2045-2322 ] ; 2020.
Abstract
Rhizoctonia solani is a necrotrophic phytopathogen belonging to basidiomycetes. It causes rice sheath blight which inflicts serious damage in rice production. The infection strategy of this pathogen remains unclear. We previously demonstrated that salicylic acid-induced immunity could block R. solani AG-1 IA infection in both rice and Brachypodium distachyon. R. solani may undergo biotrophic process using effector proteins to suppress host immunity before necrotrophic stage. To identify pathogen genes expressed at the early infection process, here we developed an inoculation method using B. distachyon which enables to sample an increased amount of semi-synchronous infection hyphae. Sixty-one R. solani secretory effector-like protein genes (RsSEPGs) were identified using in silico approach with the publicly available gene annotation of R. solani AG-1 IA genome and our RNA-sequencing results obtained from hyphae grown on agar medium. Expression of RsSEPGs was analyzed at 6, 10, 16, 24, and 32 h after inoculation by a quantitative reverse transcription-polymerase chain reaction and 52 genes could be detected at least on a single time point tested. Their expressions showed phase-specific patterns which were classified into 6 clusters. The 23 RsSEPGs in the cluster 1-3 and 29 RsSEPGs in the cluster 4-6 are expected to be involved in biotrophic and necrotrophic interactions, respectively.
DOI: 10.1038/s41598-020-71968-x
PubMed: 32913311
PubMed Central: PMC7483729
Affiliations:
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first="Sobhy S H" last="Abdelsalam">Sobhy S H. Abdelsalam</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Plant Pathology Department, Faculty of Agriculture, Alexandria University, El-Shatby, Egypt.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Plant Pathology Department, Faculty of Agriculture, Alexandria University, El-Shatby</wicri:regionArea><wicri:noRegion>El-Shatby</wicri:noRegion></affiliation></author><author><name sortKey="Kouzai, Yusuke" sort="Kouzai, Yusuke" uniqKey="Kouzai Y" first="Yusuke" last="Kouzai">Yusuke Kouzai</name><affiliation wicri:level="1"><nlm:affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama</wicri:regionArea><wicri:noRegion>Yokohama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Kihara Institute for Biological Research, Yokohama City University, Yokohama</wicri:regionArea><wicri:noRegion>Yokohama</wicri:noRegion></affiliation></author><author><name sortKey="Watanabe, Megumi" sort="Watanabe, Megumi" uniqKey="Watanabe M" first="Megumi" last="Watanabe">Megumi Watanabe</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Inoue, Komaki" sort="Inoue, Komaki" uniqKey="Inoue K" first="Komaki" last="Inoue">Komaki Inoue</name><affiliation wicri:level="1"><nlm:affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama</wicri:regionArea><wicri:noRegion>Yokohama</wicri:noRegion></affiliation></author><author><name sortKey="Matsui, Hidenori" sort="Matsui, Hidenori" uniqKey="Matsui H" first="Hidenori" last="Matsui">Hidenori Matsui</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Yamamoto, Mikihiro" sort="Yamamoto, Mikihiro" uniqKey="Yamamoto M" first="Mikihiro" last="Yamamoto">Mikihiro Yamamoto</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Ichinose, Yuki" sort="Ichinose, Yuki" uniqKey="Ichinose Y" first="Yuki" last="Ichinose">Yuki Ichinose</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Toyoda, Kazuhiro" sort="Toyoda, Kazuhiro" uniqKey="Toyoda K" first="Kazuhiro" last="Toyoda">Kazuhiro Toyoda</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Tsuge, Seiji" sort="Tsuge, Seiji" uniqKey="Tsuge S" first="Seiji" last="Tsuge">Seiji Tsuge</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Agriculture, Kyoto Prefectural University, Kyoto, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Agriculture, Kyoto Prefectural University, Kyoto</wicri:regionArea><wicri:noRegion>Kyoto</wicri:noRegion></affiliation></author><author><name sortKey="Mochida, Keiichi" sort="Mochida, Keiichi" uniqKey="Mochida K" first="Keiichi" last="Mochida">Keiichi Mochida</name><affiliation wicri:level="1"><nlm:affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama</wicri:regionArea><wicri:noRegion>Yokohama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Kihara Institute for Biological Research, Yokohama City University, Yokohama</wicri:regionArea><wicri:noRegion>Yokohama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Institute for Plant Science and Resources (IPSR), Okayama University, Okayama, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Institute for Plant Science and Resources (IPSR), Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author><author><name sortKey="Noutoshi, Yoshiteru" sort="Noutoshi, Yoshiteru" uniqKey="Noutoshi Y" first="Yoshiteru" last="Noutoshi">Yoshiteru Noutoshi</name><affiliation wicri:level="1"><nlm:affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan. noutoshi@okayama-u.ac.jp.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Environmental and Life Science, Okayama University, Okayama</wicri:regionArea><wicri:noRegion>Okayama</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Rhizoctonia solani is a necrotrophic phytopathogen belonging to basidiomycetes. It causes rice sheath blight which inflicts serious damage in rice production. The infection strategy of this pathogen remains unclear. We previously demonstrated that salicylic acid-induced immunity could block R. solani AG-1 IA infection in both rice and Brachypodium distachyon. R. solani may undergo biotrophic process using effector proteins to suppress host immunity before necrotrophic stage. To identify pathogen genes expressed at the early infection process, here we developed an inoculation method using B. distachyon which enables to sample an increased amount of semi-synchronous infection hyphae. Sixty-one R. solani secretory effector-like protein genes (RsSEPGs) were identified using in silico approach with the publicly available gene annotation of R. solani AG-1 IA genome and our RNA-sequencing results obtained from hyphae grown on agar medium. Expression of RsSEPGs was analyzed at 6, 10, 16, 24, and 32 h after inoculation by a quantitative reverse transcription-polymerase chain reaction and 52 genes could be detected at least on a single time point tested. Their expressions showed phase-specific patterns which were classified into 6 clusters. The 23 RsSEPGs in the cluster 1-3 and 29 RsSEPGs in the cluster 4-6 are expected to be involved in biotrophic and necrotrophic interactions, respectively.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32913311</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>09</Month><Day>10</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon.</ArticleTitle><Pagination><MedlinePgn>14889</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-020-71968-x</ELocationID><Abstract><AbstractText>Rhizoctonia solani is a necrotrophic phytopathogen belonging to basidiomycetes. It causes rice sheath blight which inflicts serious damage in rice production. The infection strategy of this pathogen remains unclear. We previously demonstrated that salicylic acid-induced immunity could block R. solani AG-1 IA infection in both rice and Brachypodium distachyon. R. solani may undergo biotrophic process using effector proteins to suppress host immunity before necrotrophic stage. To identify pathogen genes expressed at the early infection process, here we developed an inoculation method using B. distachyon which enables to sample an increased amount of semi-synchronous infection hyphae. Sixty-one R. solani secretory effector-like protein genes (RsSEPGs) were identified using in silico approach with the publicly available gene annotation of R. solani AG-1 IA genome and our RNA-sequencing results obtained from hyphae grown on agar medium. Expression of RsSEPGs was analyzed at 6, 10, 16, 24, and 32 h after inoculation by a quantitative reverse transcription-polymerase chain reaction and 52 genes could be detected at least on a single time point tested. Their expressions showed phase-specific patterns which were classified into 6 clusters. The 23 RsSEPGs in the cluster 1-3 and 29 RsSEPGs in the cluster 4-6 are expected to be involved in biotrophic and necrotrophic interactions, respectively.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Abdelsalam</LastName><ForeName>Sobhy S H</ForeName><Initials>SSH</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Plant Pathology Department, Faculty of Agriculture, Alexandria University, El-Shatby, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kouzai</LastName><ForeName>Yusuke</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Watanabe</LastName><ForeName>Megumi</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Inoue</LastName><ForeName>Komaki</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matsui</LastName><ForeName>Hidenori</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yamamoto</LastName><ForeName>Mikihiro</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ichinose</LastName><ForeName>Yuki</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Toyoda</LastName><ForeName>Kazuhiro</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tsuge</LastName><ForeName>Seiji</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Graduate School of Agriculture, Kyoto Prefectural University, Kyoto, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mochida</LastName><ForeName>Keiichi</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute for Plant Science and Resources (IPSR), Okayama University, Okayama, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Noutoshi</LastName><ForeName>Yoshiteru</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan. noutoshi@okayama-u.ac.jp.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>04</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>08</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>11</Day><Hour>5</Hour><Minute>42</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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